EPFL researchers publish VirTues in Nature, a foundation model for spatial proteomics that learns marker-aware representations of proteins, cells, niches, and tissues from multiplex imaging. Trained across large imaging mass cytometry and multi-technology cohorts, one backbone handles marker reconstruction, cell typing, niche annotation, and patient stratification, including zero-shot work across mismatched marker panels. In triple-negative breast cancer, VirTues biomarkers predicted anti-PD-L1 chemo-immunotherapy response and stratified disease-free survival in an independent cohort, beating prior spatial signatures and clinical schemes from the same data. Why it matters: fragmented spatial cohorts become a shared virtual tissue atlas. Caveat: clinical utility still needs prospective trials beyond retrospective cohorts.